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- In relation to this article, we declare that there is no conflict of interest.
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Received October 16, 2024
Accepted January 19, 2025
Available online May 25, 2025
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This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/bync/3.0) which permits
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Phenolic Compounds: Investigating Their Anti-Carbonic Anhydrase, Anti-Cholinesterase, Anticancer, Anticholinergic, and Antiepileptic Properties Through Molecular Docking, MM-GBSA, and Dynamics Analyses
https://doi.org/10.1007/s11814-025-00401-8
Abstract
Phenolic compounds are a new class of Carbonic Anhydrase inhibitors (CAIs). Despite numerous advancements in treatment
approaches, cancer continues to be a growing health problem worldwide. In our study, we tested the eff ects of 4-hydroxy3-methoxyacetophenone
(1) , doxycycline hydrochloride (2) , 5,7-dichloro-8-hydroxyquinoline (3) , methyl 3,4,5-trihydroxybenzoate
(4) , 2-hydroxy-4-methylacetophenone (5) , 6-hydroxy-4-methylcoumarin (6) , and 2,5-dihydroxyacetophenone (7)
on Achetylcholynesterase (AChE), Butrycholynesterase (BChE), and Human Carbonic anhydrase I (hCA I) enzymes. The
U2OS human osteosarcoma cell line was used to determine the anticancer potential of these phenolic compounds. The
eff ects of the compounds on proliferation and colony formation were analyzed using the Neutral Red Uptake (NRU) assay
and the clonogenic assay. The K i values of arachidonoyl dopamine, 2,4,6-trihydroxybenzaldehyde, and 3,4-dihydroxy5-methoxybenzoic
acid were 203.80, 1170.00, and 910.00 mM, respectively, for hCA I, and 75.25, 354.00, and 1510.00 mM,
respectively, for Human Carbonic anhydrase II (hCA II). Additionally, IC 50 values from in vivo studies were found to range
from 173.25 to 1360.00 mM for CA I and CA II, respectively, using CO 2 -hydratase activity methods. The NRU assay results
revealed that the compounds had a dose-dependent cytotoxic eff ect on U2OS cells. The IC 50 values of the compounds in
U2OS osteosarcoma cells were determined to be > 100, 93.7, 81.4, 26.9, > 100, 53.1, and > 100 μM, respectively. Notably,
methyl 3,4,5-trihydroxybenzoate (4) , the compound with the lowest IC 50 value, signifi cantly suppressed colony formation at
5 and 10 μM concentrations. These results demonstrated that the phenolic compounds used in in vivo studies could inhibit
approximately 30% of the CO2-hydratase activity of the total CA enzyme of rat erythrocytes. Furthermore, the anticancer
potential of the tested compounds suggests that these molecules could pave the way for the development of new approaches in
cancer treatment. The activities of the seven molecules studied were compared against AChE (PDB ID: 4M0E), BChE (PDB
ID: 5NN0), hCA I (PDB ID: 2CAB), and E3 ubiquitin-protein ligase (PDB ID: 4HG7) proteins. The binding free energy of
the molecule with the highest docking score is computed using MM/GBSA techniques. Finally, molecular dynamics simulations
were performed between 6-hydroxy-4-methylcoumarin and the 4M0E protein over a 0–200 ns interval.

