Issue
Korean Journal of Chemical Engineering,
Vol.33, No.4, 1318-1324, 2016
Artificial neural networks as classification and diagnostic tools for lymph node-negative breast cancers
Artificial neural networks (ANNs) can be used to develop a technique to classify lymph node negative breast cancer that is prone to distant metastases based on gene expression signatures. The neural network used is a multilayered feed forward network that employs back propagation algorithm. Once trained with DNA microarraybased gene expression profiles of genes that were predictive of distant metastasis recurrence of lymph node negative breast cancer, the ANNs became capable of correctly classifying all samples and recognizing the genes most appropriate to the classification. To test the ability of the trained ANN models in recognizing lymph node negative breast cancer, we analyzed additional idle samples that were not used beforehand for the training procedure and obtained the correctly classified result in the validation set. For more substantial result, bootstrapping of training and testing dataset was performed as external validation. This study illustrates the potential application of ANN for breast tumor diagnosis and the identification of candidate targets in patients for therapy.
[References]
  1. Wang Y, Klijn JGM, Zhang Y, Sieuwerts AM, Lancet, 365, 671, 2005
  2. Venkateswarlu C, Kiran K, Eswari JS, Appl. Artif. Intell., 26, 903, 2012
  3. Eswari JS, Anand M, Venkateswarlu C, J. Chem. Technol. Biotechnol., 88(2), 271, 2013
  4. Eswari JS, Venkateswarlu C, Int. J. Pharm., 4, 465, 2012
  5. Eswari JS, Venkateswarlu C, Chem. Eng. Commun., In Press (2015).
  6. Eswari JS, Venkateswarlu C, Environ. Eng. Sci., 30, 527, 2013
  7. Kim YS, Hwang SJ, Oh JM, Whang GD, Yoo CK, Korean J. Chem. Eng., 26, 969, 2010
  8. Banerjee N, Park J, Korean J. Chem. Eng., 32(7), 1207, 2015
  9. Ilbay Z, Sahin S, Buyukkabasakal K, Korean J. Chem. Eng., 31(9), 1661, 2014
  10. Zarenezhad B, Aminian A, Korean J. Chem. Eng., 28(5), 1286, 2011
  11. Molashahi M, Hashemipour H, Korean J. Chem. Eng., 29(5), 601, 2012
  12. Khan J, Wei JS, Ringner M, Saal LH, Ladanyi M, Westermann F, Nat. Med., 7, 673, 2001
  13. Chang YT, Huang CS, Yao CT, Su SL, World J. Gastroenterol., 20, 14463, 2014
  14. Chang YT, Yao CT, Su SL, Chou YC, World J. Gastroenterol., 20, 17476, 2014
  15. Lin C, Chu CM, Lin J, Yang HY, Su SL, PLOS One., 10, 2015
  16. Chu CM, Chen CJ, Chan DC, Wu HS, World J. Surg. Oncol., 12, 80, 2014
  17. Lai CH, Chu NF, Chang CW, Wang SL, PLOS One., 8, 12, 2013
  18. Van’t Veer LJ, Dai H, Van de Vijver MJ, He YD, Nature, 415, 530, 2002
  19. Dor AB, Bruhn L, Friedman N, Nachman I, J. Comp. Biol., 7, 559, 2000
  20. Ramaswamy S, Ross KN, Lander ES, Golub TR, Nat. Genet., 33, 49, 2003
  21. Amato F, Lopez A, Pena-Mendez EM, Vahara P, J. Appl. Biomed., 11, 47, 2013
  22. Chuang HY, Lee E, Liu YT, Lee D, Ideker T, Mol. Syst. Biol., 3, 140, 2007
  23. Peterson LE, Ozen M, Erdem H, Amini A, Gomez L, Nelson CC, IEEE, 1, 2005
  24. Lisboa PJG, Neural Netw., 15, 11, 2002
  25. Siegelmann HT, Sontag ED, Appl. Math. Lett., 4, 77, 1991
  26. Balcazar JL, IEEE, 7141, 14, 1993
  27. Chou HL, Yao CT, Su SL, Lee CY, BMC Bioinfo., 14, 100, 2013