In this study, both transient behaviors of a biofilter system with improved design and a conventional biofilter were observed to perform the treatment of waste air containing malodor and volatile organic compound (VOC). Their behaviors of removal efficiency and treated concentration of malodor and VOC were compared each other. During 1st~7th stages of improved biofilter system operation it was observed that the order of treated ethanol concentration at each sampling port was switched due to the difference of microbe-population-distribution in spite of the difference of biofilter effective height. However, at 8th stage of its operation, the order of treated ethanol concentration at each sampling port was consistent to the order of biofilter effective height at each sampling port. The same was applied to the case of hydrogen sulfide, even though the difference of switched treated-hydrogen sulfide-concentrations was less than that of switched treated-ethanol-concentrations. The ethanol-removal efficiency of the biofilter system with improved design was ca. 96%, which was greater by 2% than that of the conventional biofilter. The transient behavior of treated hydrogen sulfide concentration of both biofilters were similar to each other. However, the concentration of hydrogen sulfide treated by the biofilter system with improved design was observed lower than that by the conventional biofilter. The hydrogen sulfide-removal efficiency of the biofilter system with improved design was higher by ca. 2% than that of the conventional biofilter. Therefore, the hydrogen sulfide-removal efficiency of the biofilter system with improved design was observed to be enhanced by the same as its ethanol-removal efficiency.